Basic Information
Locus ID:
BniB01g018440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
SERK5
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 10433090 | 10437143 | + | BniB01g018440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 66,371.30 Da | 41.47 | 102.88 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 2.4E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 277 | 547 | 1.0E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 254 | 550 | 9.29E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 203 | 3.51E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 205 | 7.2E-55 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 352 | 569 | 3.0E-67 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 244 | 351 | 1.2E-38 | - |
| SMART | SM00220 | serkin_6 | 275 | 549 | 6.8E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 275 | 559 | 36.739227 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 398 | 410 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 281 | 303 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G13790.1 | somatic embryogenesis receptor-like kinase 4. | 0 |
| RefSeq | XP_013743759.2 | somatic embryogenesis receptor kinase 4-like [Brassica napus] | 0 |
| Q9SKG5 | Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana OX=3702 GN=SERK4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VBK5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028011 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology