Basic Information
Locus ID:
BniB01g017910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
EBF1
Description:
Ein3-binding F box protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 10124677 | 10127850 | + | BniB01g017910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 73,809.87 Da | 40.39 | 105.81 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 291 | 315 | 1.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 266 | 289 | 0.0016 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 610 | 629 | 0.13 | IPR001611 |
| Pfam | PF00646 | F-box domain | 128 | 167 | 1.1E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 240 | 690 | 4.12E-30 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 227 | 468 | 1.96E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 125 | 165 | 1.7E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 343 | 496 | 3.2E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 122 | 342 | 6.4E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 497 | 555 | 1.8E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 556 | 657 | 1.7E-21 | IPR032675 |
| SMART | SM00256 | fbox_2 | 131 | 173 | 0.0018 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 556 | 579 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 504 | 529 | 0.18 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 318 | 343 | 0.004 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 530 | 555 | 9.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 424 | 449 | 23.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 266 | 291 | 1.8E-8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 398 | 423 | 0.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 292 | 317 | 2.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 581 | 606 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 240 | 265 | 0.062 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 633 | 658 | 0.93 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 450 | 475 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 607 | 631 | 0.0013 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_013687160.2 | EIN3-binding F-box protein 1 [Brassica napus] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VBU4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028062 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology