halophFGD

Basic Information

Locus ID: BniB01g017790.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: protein ubiquitination

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B1	10062704	10063819	-	BniB01g017790.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.22	42,168.02 Da	52.89	81.40	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01344	Kelch motif	169	208	2.5E-8	IPR006652
SUPERFAMILY	SSF117281	Kelch motif	145	340	4.18E-26	IPR015915
Gene3D	G3DSA:2.120.10.80	-	139	304	6.1E-17	IPR015915
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT2G44700.1	Galactose oxidase/kelch repeat superfamily protein.	0
RefSeq	XP_018481796.1	PREDICTED: F-box/kelch-repeat protein At2g44700-like [Raphanus sativus]	0
Swiss-Prot	Q84RE1	F-box/kelch-repeat protein At2g44700 OS=Arabidopsis thaliana OX=3702 GN=At2g44700 PE=2 SV=2	0
TrEMBL	A0A8X7VBL5	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028076 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	2	AT2G44630.1, AT2G44700.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000664m.g.v1.0, Thhalv10018745m.g.v1.0 ... Thhalv10019473m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g03450.v2.2, Sp4g05040.v2.2
Brassicaceae	Brassica nigra	2	BniB01g017790.2N, BniB08g043110.2N