Basic Information
Locus ID:
BniB01g016620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 9199775 | 9200944 | - | BniB01g016620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 45,355.28 Da | 47.36 | 88.12 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 43 | 1.2E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 216 | 340 | 2.2E-29 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 60 | 8.37E-9 | IPR036047 |
| SMART | SM00256 | fbox_2 | 11 | 50 | 2.0E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 122 | 352 | 3.5E-47 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 55 | 10.451268 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50220.1 | F-box family protein. | 0 |
| RefSeq | XP_018514145.1 | putative F-box protein At5g50220 [Brassica rapa] | 0 |
| Q9FGS3 | Putative F-box protein At5g50220 OS=Arabidopsis thaliana OX=3702 GN=At5g50220 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8APB9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028125 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G52490.1, AT3G56670.1, AT5G50220.1, AT5G62060.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10002240m.g.v1.0, Thhalv10005381m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03180.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g016620.2N, BniB01g016630.2N, BniB01g027720.2N ... |