Basic Information
Locus ID:
BniB01g015970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 8797148 | 8803124 | + | BniB01g015970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 118,859.42 Da | 46.61 | 69.28 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 641 | 691 | 1.1E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 424 | 478 | 3.0E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 955 | 1043 | 5.8E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 793 | 850 | 3.7E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 702 | 753 | 5.55E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 695 | 784 | 1.3E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 795 | 855 | 8.0E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 893 | 1065 | 4.9E-7 | - |
| SMART | SM00249 | PHD_3 | 796 | 852 | 0.021 | IPR001965 |
| SMART | SM00249 | PHD_3 | 707 | 748 | 8.1E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 705 | 750 | 9.9795 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 708 | 747 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 602 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_018483664.1 | PREDICTED: uncharacterized protein LOC108854564 [Raphanus sativus] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VC54 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028178 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology