Basic Information
Locus ID:
BniB01g015020.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 8115765 | 8122824 | + | BniB01g015020.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 145,957.22 Da | 45.51 | 97.22 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 255 | 297 | 6.16305E-25 | - |
| CDD | cd16664 | RING-Ubox_PUB | 927 | 969 | 8.68324E-19 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 471 | 509 | 2.1E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 1053 | 1093 | 7.0E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 927 | 993 | 1.7E-14 | IPR003613 |
| Pfam | PF04564 | U-box domain | 251 | 321 | 9.9E-23 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 1138 | 1176 | 2.0E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 386 | 426 | 9.4E-8 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 912 | 999 | 4.71E-23 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 1024 | 1309 | 1.86E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 327 | 7.78E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 357 | 640 | 6.91E-49 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 234 | 328 | 2.4E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 1011 | 1314 | 1.2E-49 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 662 | 789 | 2.5E-9 | IPR036537 |
| Gene3D | G3DSA:1.20.930.20 | - | 1 | 116 | 1.0E-7 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 537 | 653 | 2.7E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 352 | 536 | 1.6E-36 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 920 | 996 | 1.9E-21 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 254 | 317 | 2.6E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 552 | 592 | 38.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 926 | 989 | 1.5E-21 | IPR003613 |
| SMART | SM00185 | arm_5 | 470 | 510 | 0.03 | IPR000225 |
| SMART | SM00185 | arm_5 | 386 | 427 | 0.004 | IPR000225 |
| SMART | SM00185 | arm_5 | 1261 | 1301 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 511 | 551 | 13.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 1137 | 1177 | 0.0016 | IPR000225 |
| SMART | SM00185 | arm_5 | 428 | 469 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 1178 | 1218 | 41.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 1053 | 1094 | 2.6 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 250 | 324 | 43.841057 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 922 | 996 | 25.698524 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 397 | 440 | 11.8124 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 440 | 482 | 8.627399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 1064 | 1107 | 10.6924 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1005 | 1019 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1019 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 354 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28830.1 | PLANT U-BOX 12. | 0 |
| RefSeq | XP_013676419.2 | U-box domain-containing protein 12 [Brassica napus] | 0 |
| Q9ZV31 | U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VC89 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028257 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology