Basic Information
Locus ID:
BniB01g014960.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 8086658 | 8087086 | - | BniB01g014960.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 15,691.10 Da | 45.22 | 90.49 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 90 | 133 | 3.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 138 | 1.39E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 137 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 91 | 132 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 133 | 12.356501 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28920.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_033145177.1 | RING-H2 finger protein ATL72 [Brassica rapa] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8APP9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009927m.g.v1.0, Thhalv10023843m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g06310.v2.2, Sp4g11730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014960.2N, BniB03g002300.2N |