Basic Information
Locus ID:
BniB01g014870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin fusion degradation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 8005797 | 8007349 | - | BniB01g014870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 35,588.95 Da | 43.62 | 62.48 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 11 | 182 | 3.2E-77 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 107 | 180 | 3.1E-33 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 2 | 106 | 5.3E-42 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 213 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_018478628.1 | PREDICTED: ubiquitin fusion degradation protein 1 homolog [Raphanus sativus] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0N3U3 | ubiquitin fusion degradation protein 1 homolog OS=Raphanus sativus OX=3726 GN=LOC108849568 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology