Basic Information
Locus ID:
BniB01g014250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
positive regulation of bicellular tight junction assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 7555097 | 7560045 | + | BniB01g014250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 86,760.04 Da | 39.78 | 88.83 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 293 | 328 | 2.2E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 124 | 669 | 5.89E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 290 | 374 | 1.2E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 533 | 1.8E-6 | IPR032675 |
| SMART | SM00579 | 9598neu4hmm | 205 | 284 | 4.8E-14 | IPR006566 |
| SMART | SM00579 | 9598neu4hmm | 696 | 775 | 6.9E-19 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 291 | 328 | 11.299088 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 81 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21990.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_013730393.2 | F-box/LRR-repeat protein At2g29930-like [Brassica napus] | 0 |
| Q9LM64 | Putative F-box protein At1g21990 OS=Arabidopsis thaliana OX=3702 GN=At1g21990 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7VC40 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G21990.1, AT1G47920.1, AT1G48390.1, AT1G48400.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012238m.g.v1.0, Thhalv10013291m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29200.v2.2 |
| Brassicaceae | Brassica nigra | 18 | BniB01g014250.2N, BniB02g013580.2N, BniB02g052700.2N ... |