Basic Information
Locus ID:
BniB01g012680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 6485896 | 6492413 | + | BniB01g012680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.40 | 81,787.67 Da | 41.24 | 85.50 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 4.76869E-49 | - |
| CDD | cd02413 | 40S_S3_KH | 506 | 586 | 4.76869E-49 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 597 | 679 | 5.4E-23 | IPR001351 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 106 | 188 | 5.4E-23 | IPR001351 |
| Pfam | PF07650 | KH domain | 20 | 93 | 2.7E-12 | IPR004044 |
| Pfam | PF07650 | KH domain | 511 | 584 | 2.7E-12 | IPR004044 |
| Pfam | PF07939 | Protein of unknown function (DUF1685) | 338 | 392 | 2.7E-26 | IPR012881 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 584 | 682 | 6.28E-26 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 1.34E-24 | IPR009019 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 501 | 590 | 1.34E-24 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 191 | 6.28E-26 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 488 | 582 | 8.9E-48 | IPR015946 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 2.9E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 219 | 2.2E-62 | IPR036419 |
| Gene3D | G3DSA:3.30.1140.32 | - | 584 | 711 | 1.7E-62 | IPR036419 |
| SMART | SM00322 | kh_6 | 42 | 106 | 0.017 | IPR004087 |
| SMART | SM00322 | kh_6 | 533 | 597 | 0.017 | IPR004087 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 210 | 3.1E-69 | IPR005703 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 499 | 701 | 3.1E-69 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.281033 | IPR004044 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 512 | 583 | 11.281033 | IPR004044 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 407 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53870.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_009132808.2 | 40S ribosomal protein S3-2 [Brassica rapa] | 0 |
| Q9M339 | Small ribosomal subunit protein uS3y OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9QRG5 | 30S ribosomal protein S3, chloroplastic OS=Brassica cretica OX=69181 GN=F2Q69_00017073 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology