Basic Information
Locus ID:
BniB01g012630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK24
Description:
ATP binding calcium ion binding calmodulin-dependent protein kinase kinase protein kinase protein serine threonine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 6475197 | 6477404 | + | BniB01g012630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 66,080.86 Da | 41.02 | 79.31 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 65 | 323 | 4.52586E-136 | - |
| Pfam | PF00069 | Protein kinase domain | 66 | 324 | 1.2E-77 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 384 | 431 | 3.9E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 442 | 507 | 2.6E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 353 | 519 | 1.82E-38 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 43 | 335 | 3.78E-87 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 365 | 433 | 1.8E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 68 | 151 | 1.2E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 334 | 9.8E-61 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 342 | 506 | 1.8E-45 | - |
| SMART | SM00054 | efh_1 | 371 | 399 | 2.0E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 407 | 435 | 0.12 | IPR002048 |
| SMART | SM00054 | efh_1 | 443 | 471 | 6.8E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 66 | 324 | 3.7E-103 | IPR000719 |
| SMART | SM00054 | efh_1 | 481 | 509 | 1.1E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 403 | 438 | 9.57592 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 439 | 474 | 12.616518 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 367 | 402 | 15.182896 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 477 | 512 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 66 | 324 | 50.576412 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 72 | 95 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 490 | 502 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 452 | 464 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 380 | 392 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 186 | 198 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 416 | 428 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 42 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_018482881.1 | PREDICTED: calcium-dependent protein kinase 24-like [Raphanus sativus] | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8ART0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology