Basic Information
Locus ID:
BniB01g012380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 6339952 | 6341812 | - | BniB01g012380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 59,499.18 Da | 48.63 | 67.12 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 126 | 176 | 1.50949E-17 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 196 | 260 | 2.8E-14 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 326 | 2.4E-7 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 126 | 172 | 1.7E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 327 | 4.62E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 267 | 3.12E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 209 | 7.88E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 207 | 6.8E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 256 | 497 | 2.1E-71 | - |
| SMART | SM00647 | ibrneu5 | 196 | 260 | 3.1E-20 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 269 | 326 | 0.043 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 122 | 330 | 47.832329 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 172 | 9.479666 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 308 | 317 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013634927.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Brassica oleracea var. oleracea] | 0 |
| Q9SKC2 | Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana OX=3702 GN=ARI11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AQ78 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology