Basic Information
Locus ID:
BniB01g011410.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 5803807 | 5805120 | - | BniB01g011410.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 25,430.58 Da | 46.37 | 71.60 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 201 | 237 | 4.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 120 | 154 | 7.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 88 | 236 | 1.08E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 237 | 1.3E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 4.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 116 | 154 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 75 | 113 | 49.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 237 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 123 | 163 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 237 | 12.130133 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 88 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_048634365.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Brassica napus] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A078G124 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaA04g18990D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology