Basic Information
Locus ID:
BniB01g010560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 5368456 | 5370624 | + | BniB01g010560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 79,322.88 Da | 45.60 | 88.74 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 257 | 299 | 0.0047 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 439 | 695 | 1.1E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 409 | 698 | 7.36E-60 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 392 | 495 | 6.4E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 497 | 709 | 2.0E-49 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 427 | 714 | 29.219938 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 255 | 298 | 9.959089 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 330 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013636241.1 | PREDICTED: protein LYK5 [Brassica oleracea var. oleracea] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8ANG1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028698 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology