Basic Information
Locus ID:
BniB01g009270.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 4757530 | 4758641 | - | BniB01g009270.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 24,254.91 Da | 52.12 | 89.36 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 3 | 199 | 2.00162E-85 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 2 | 199 | 1.8E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 198 | 2.87E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 217 | 4.3E-62 | - |
| SMART | SM00220 | serkin_6 | 1 | 207 | 4.6E-14 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 202 | 30.60507 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 61 | 73 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 19 | 32 | 3.6E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 170 | 192 | 3.6E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 55 | 73 | 3.6E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 126 | 148 | 3.6E-16 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_009141420.1 | serine/threonine-protein kinase STE20 [Brassica rapa] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S0R3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_043214 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology