Basic Information
Locus ID:
BniB01g008660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 4455147 | 4460287 | + | BniB01g008660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 93,367.27 Da | 40.94 | 92.02 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 166 | 462 | 3.13649E-84 | - |
| Pfam | PF06337 | DUSP domain | 7 | 72 | 2.1E-11 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 166 | 461 | 3.6E-66 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 476 | 551 | 2.6E-16 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 644 | 730 | 2.8E-21 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 734 | 799 | 3.3E-14 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 640 | 799 | 1.69E-39 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 163 | 464 | 2.16E-95 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 476 | 550 | 1.07E-16 | IPR035927 |
| SUPERFAMILY | SSF143791 | DUSP-like | 7 | 72 | 4.45E-14 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 628 | 728 | 2.5E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 73 | 157 | 2.2E-5 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 475 | 556 | 9.3E-19 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 729 | 800 | 1.5E-19 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 3 | 72 | 5.5E-16 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 158 | 474 | 1.6E-104 | - |
| SMART | SM00695 | dusp | 4 | 75 | 3.7E-7 | IPR006615 |
| SMART | SM00695 | dusp | 466 | 554 | 6.5E-17 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 165 | 464 | 59.544308 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 448 | 552 | 13.906397 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 1 | 72 | 11.902244 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 643 | 820 | 16.413527 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 404 | 421 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 644 | 659 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 166 | 181 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_018479900.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like [Raphanus sativus] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8ANS1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028878 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology