Basic Information
Locus ID:
BniB01g008560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Weak chloroplast movement under blue light
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 4420802 | 4430769 | - | BniB01g008560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 92,819.85 Da | 47.60 | 81.63 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 53 | 5.1E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 203 | 352 | 2.7E-35 | IPR006527 |
| Pfam | PF07734 | F-box associated | 652 | 797 | 5.7E-31 | IPR006527 |
| Pfam | PF00646 | F-box domain | 368 | 405 | 8.3E-13 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 361 | 480 | 1.83E-15 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 80 | 5.89E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 351 | 405 | 4.0E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 55 | 1.9E-7 | - |
| SMART | SM00256 | fbox_2 | 369 | 409 | 5.2E-11 | IPR001810 |
| SMART | SM00256 | fbox_2 | 19 | 59 | 2.2E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 103 | 345 | 3.8E-42 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 651 | 773 | 2.1E-23 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 363 | 416 | 12.517831 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 66 | 11.458055 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16580.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018482177.1 | PREDICTED: F-box protein At2g14710-like [Raphanus sativus] | 0 |
| Q9LUS6 | F-box/kelch-repeat protein At3g16580 OS=Arabidopsis thaliana OX=3702 GN=At3g16580 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VD03 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028888 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |