Basic Information
Locus ID:
BniB01g008540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK25
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 4413823 | 4415807 | + | BniB01g008540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 59,474.46 Da | 40.88 | 78.73 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 138 | 395 | 1.71567E-135 | - |
| Pfam | PF00069 | Protein kinase domain | 138 | 396 | 1.6E-73 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 425 | 513 | 9.74E-12 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 127 | 420 | 2.02E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 140 | 223 | 7.3E-27 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 404 | 522 | 9.3E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 224 | 403 | 3.5E-59 | - |
| SMART | SM00220 | serkin_6 | 138 | 396 | 5.4E-96 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 138 | 396 | 47.452797 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 439 | 474 | 11.417016 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 144 | 167 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 258 | 270 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35890.1 | calcium-dependent protein kinase 25. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_018482916.1 | PREDICTED: calcium-dependent protein kinase 25-like [Raphanus sativus] | 0 |
| Q9SJ61 | Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CPK25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VDA2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028889 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017592m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18140.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g008540.2N |