Basic Information
Locus ID:
BniB01g008460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 4380607 | 4381848 | + | BniB01g008460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 46,217.52 Da | 53.91 | 102.91 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 3.85873E-24 | - |
| Pfam | PF04564 | U-box domain | 7 | 76 | 1.7E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 100 | 378 | 1.44E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 79 | 7.07E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 396 | 1.3E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 1.1E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 10 | 74 | 1.2E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 81 | 42.611504 | IPR003613 |
| Coils | Coil | Coil | 116 | 136 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_033146301.1 | E3 ubiquitin-protein ligase PUB23 [Brassica rapa] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VDS7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028898 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology