Basic Information
Locus ID:
BniB01g007850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 4020910 | 4026631 | + | BniB01g007850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 115,738.74 Da | 45.53 | 81.71 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 658 | 698 | 8.01284E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 595 | 642 | 8.4E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 336 | 390 | 2.4E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 659 | 700 | 4.8E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 644 | 701 | 2.26E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 754 | 802 | 2.26E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 645 | 722 | 3.3E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 745 | 805 | 1.2E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 746 | 803 | 0.041 | IPR001965 |
| SMART | SM00249 | PHD_3 | 658 | 699 | 1.2E-10 | IPR001965 |
| ProSiteProfiles | PS51379 | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 406 | 435 | 7.222718 | IPR017896 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 656 | 701 | 10.4245 | IPR019787 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 415 | 426 | - | IPR017900 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 659 | 698 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 71 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_018484727.1 | PREDICTED: uncharacterized protein LOC108855414 [Raphanus sativus] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0NIZ5 | uncharacterized protein LOC108855414 OS=Raphanus sativus OX=3726 GN=LOC108855414 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology