Basic Information
Locus ID:
BniB01g007330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011), Acyl-CoA N-acyltransferase (InterPro IPR016181), Zinc finger, PHD-finger (InterPro IPR019787)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 3693074 | 3697616 | + | BniB01g007330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 90,974.32 Da | 49.40 | 77.73 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 469 | 506 | 1.92523E-18 | - |
| CDD | cd04301 | NAT_SF | 707 | 768 | 0.00911168 | - |
| Pfam | PF00628 | PHD-finger | 469 | 510 | 8.0E-9 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 199 | 256 | 3.2E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 403 | 452 | 4.5E-17 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 547 | 602 | 1.9E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 703 | 795 | 1.9E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 465 | 512 | 8.23E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 547 | 607 | 4.1E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 647 | 816 | 1.3E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 460 | 534 | 7.3E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 469 | 510 | 1.6E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 548 | 605 | 4.3E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 467 | 512 | 10.006199 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 470 | 509 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 114 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_013637052.1 | PREDICTED: uncharacterized protein LOC106342612 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VDG8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_028999 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology