Basic Information
Locus ID:
BniB01g005540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 2725990 | 2727090 | + | BniB01g005540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 39,601.59 Da | 80.43 | 64.23 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 175 | 216 | 6.32758E-22 | - |
| Pfam | PF13639 | Ring finger domain | 174 | 216 | 9.1E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 246 | 355 | 4.3E-31 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 5 | 34 | 2.1E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 221 | 8.01E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 222 | 1.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 175 | 215 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 216 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 353 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_018481844.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHC2A [Raphanus sativus] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VDN1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029104 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology