Basic Information
Locus ID:
BniB01g005200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 2565144 | 2566886 | + | BniB01g005200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 35,111.73 Da | 48.89 | 93.66 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 94 | 246 | 3.4948E-40 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 95 | 277 | 1.9E-39 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 93 | 281 | 5.63E-38 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 90 | 283 | 6.1E-43 | IPR023214 |
| SMART | SM00577 | forpap2 | 93 | 257 | 1.6E-51 | IPR004274 |
| TIGRFAM | TIGR02251 | HIF-SF_euk: dullard-like phosphatase domain | 94 | 279 | 4.2E-52 | IPR011948 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 90 | 270 | 33.832516 | IPR004274 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55960.1 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein. | 0 |
| RefSeq | XP_009141872.1 | carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [Brassica rapa] | 0 |
| Q07949 | Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PSR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AR92 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2590, jg34129 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17005 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035325 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21432, Sbi_jg22419 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16303 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016458 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62851, Sgl67469 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018825, gene:ENSEOMG00000021976 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0019870, CQ.Regalona.r1.2AG0021620 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30177000, pistato.v30267050 |
| Apiaceae | Apium graveolens | 1 | Ag10G01284 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003110, COCNU_04G014060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709587, gene-LOC103718402 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.250.V1.1, AsparagusV1_07.465.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G33773, Ftri9G13714 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55960.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006119m.g.v1.0, Thhalv10016941m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g22460.v2.2, Sp5g06570.v2.2, Sp5g18250.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g005200.2N, BniB06g056640.2N, BniB08g070510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0126, Ceq08G1014 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0133, Cgl02G0139, Cgl08G1036 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g16460, gene.Cymno05g15460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0561s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3943 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1875 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040515 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02629, Lb7G33667 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3772, AH05.2098, BH02.3784, BH05.2232, BH07.4099 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038850, gene-QOZ80_1BG0088870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0072440.1, HORVU.MOREX.r3.3HG0303690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014241, gene-QYE76_055606 |
| Poaceae | Oryza coarctata | 4 | Oco01G024120, Oco02G024890, Oco09G011820, Oco10G011780 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g61640.1, LOC_Os05g39070.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G326200, gene-BS78_09G171800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0502002, Pt_Chr0506097, Pt_Chr0601928, Pt_Chr0602017 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G005510, Chr03G019410, Chr05G027880, Chr08G022650 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G473000, Tel3E01G564100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG043510, gene_TRIDC1BG049370 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G292000.2, TraesCS1B02G301400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb148930_P002, Zm00001eb351710_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11505, nbis-gene-24176, nbis-gene-31526 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11476, Zma_g28406, Zma_g8937 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.164, evm.TU.LG10.989, evm.TU.LG17.991 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.321, evm.TU.Scaffold_4_RagTag.956 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14094, nbisL1-mrna-25906 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16654, nbisL1-mrna-2715 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14245, nbisL1-mrna-1451 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.614 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000748, Maker00010094 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1974, nbisL1-mrna-439 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18893, nbisL1-mrna-9291 |
| Salicaceae | Populus euphratica | 4 | populus_peu06551, populus_peu11436, populus_peu20432 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608992, gene-LOC132640397 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020957, gene-LOC107023732 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21547_chr08_-, gene_10712 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1805, TC08G0918 |
| Zosteraceae | Zostera marina | 1 | Zosma02g21580.v3.1 |