halophFGD

Basic Information

Locus ID: BniB01g004750.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Appr-1'-p processing enzyme

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B1	2329531	2336503	+	BniB01g004750.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.36	93,397.29 Da	40.69	72.92	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02908	Macro_OAADPr_deacetylase	277	460	1.67058E-71	-
CDD	cd02908	Macro_OAADPr_deacetylase	558	702	1.00684E-76	-
Pfam	PF01283	Ribosomal protein S26e	738	843	7.3E-52	IPR000892
Pfam	PF03330	Lytic transglycolase	70	154	4.9E-21	IPR009009
Pfam	PF01357	Expansin C-terminal domain	166	244	2.8E-30	IPR007117
Pfam	PF01661	Macro domain	578	693	1.5E-37	IPR002589
Pfam	PF01661	Macro domain	310	428	2.4E-32	IPR002589
SUPERFAMILY	SSF52949	Macro domain-like	269	458	1.61E-45	IPR043472
SUPERFAMILY	SSF52949	Macro domain-like	557	708	2.52E-49	IPR043472
SUPERFAMILY	SSF50685	Barwin-like endoglucanases	19	183	2.02E-54	IPR036908
SUPERFAMILY	SSF49590	PHL pollen allergen	162	255	1.83E-36	IPR036749
Gene3D	G3DSA:2.60.40.760	-	165	255	7.4E-26	IPR036749
Gene3D	G3DSA:3.30.1740.20	Ribosomal protein S26e	738	851	3.7E-57	IPR038551
Gene3D	G3DSA:2.40.40.10	-	23	161	5.5E-45	IPR036908
Gene3D	G3DSA:3.40.220.10	Leucine Aminopeptidase, subunit E, domain 1	467	730	2.0E-58	IPR043472
Gene3D	G3DSA:3.40.220.10	Leucine Aminopeptidase, subunit E, domain 1	256	460	2.4E-57	IPR043472
SMART	SM00506	YBR022w_8	557	695	2.0E-52	IPR002589
SMART	SM00506	YBR022w_8	276	428	3.4E-41	IPR002589
SMART	SM00837	dpbb_1	70	155	2.8E-56	IPR007112
ProSiteProfiles	PS51154	Macro domain profile.	545	714	27.107653	IPR002589
ProSiteProfiles	PS50843	Expansin, Cellulose-binding-like domain profile.	175	255	23.755424	IPR007117
ProSiteProfiles	PS50842	Expansin, family-45 endoglucanase-like domain profile.	53	165	30.711821	IPR007112
ProSiteProfiles	PS51154	Macro domain profile.	264	463	21.546061	IPR002589
ProSitePatterns	PS00733	Ribosomal protein S26e signature.	810	817	-	IPR000892
PRINTS	PR01226	Expansin signature	140	153	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	241	257	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	123	140	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	65	79	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	92	103	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	176	197	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	212	233	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	104	114	1.8E-79	IPR002963
PRINTS	PR01226	Expansin signature	164	176	1.8E-79	IPR002963
PRINTS	PR01225	Expansin/Lol pI family signature	52	70	2.3E-49	IPR007118
PRINTS	PR01225	Expansin/Lol pI family signature	148	164	2.3E-49	IPR007118
PRINTS	PR01225	Expansin/Lol pI family signature	241	255	2.3E-49	IPR007118
PRINTS	PR01225	Expansin/Lol pI family signature	74	92	2.3E-49	IPR007118
PRINTS	PR01225	Expansin/Lol pI family signature	203	217	2.3E-49	IPR007118
PRINTS	PR01225	Expansin/Lol pI family signature	34	49	2.3E-49	IPR007118
MobiDBLite	mobidb-lite	consensus disorder prediction	709	728	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	733	753	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	709	753	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	824	867	-	-

Gene Ontology

Biological Process:

GO:0006412 (translation) GO:0009664 (plant-type cell wall organization)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005576 (extracellular region) GO:0005840 (ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G40610.1	expansin A8. member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
RefSeq	XP_018484995.1	PREDICTED: expansin-A8-like [Raphanus sativus]
Swiss-Prot	O22874	Expansin-A8 OS=Arabidopsis thaliana OX=3702 GN=EXPA8 PE=2 SV=1
TrEMBL	A0A816JZ89	(rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C04P68430.1 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14196, jg14197, jg3108, jg6838
Aizoaceae	Mesembryanthemum crystallinum	1	gene_17085
Amaranthaceae	Atriplex hortensis	1	Ah032082
Amaranthaceae	Beta vulgaris	1	BVRB_2g042690
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg30145, Sbi_jg32514, Sbi_jg43591
Amaranthaceae	Salicornia europaea	1	Seu_jg18312
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004070
Amaranthaceae	Suaeda glauca	2	Sgl66058, Sgl70374
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016050, gene:ENSEOMG00000017746 ... gene:ENSEOMG00000049878
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0002740, CQ.Regalona.r1.2BG0003940
Anacardiaceae	Pistacia vera	2	pistato.v30177770, pistato.v30251310
Apiaceae	Apium graveolens	1	Ag7G00269
Arecaceae	Cocos nucifera	2	COCNU_04G012700, COCNU_16G005750
Arecaceae	Phoenix dactylifera	2	gene-LOC103702127, gene-LOC103720404
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.548.V1.1
Asteraceae	Flaveria trinervia	1	Ftri8G03304
Brassicaceae	Arabidopsis thaliana	1	AT2G40600.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10017560m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g22920.v2.2, Sp4g22930.v2.2
Brassicaceae	Brassica nigra	2	BniB01g004750.2N, BniB06g000210.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G0040
Casuarinaceae	Casuarina glauca	1	Cgl02G0043
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno15g06660
Dunaliellaceae	Dunaliella salina	1	Dusal.0622s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate08g11410, gene.Thate08g11420
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.1700
Plantaginaceae	Plantago ovata	1	Pov_00011627
Plumbaginaceae	Limonium bicolor	2	Lb1G02535, Lb1G02547
Poaceae	Echinochloa crus-galli	3	AH01.3725, BH01.4076, CH01.4337
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0247420, gene-QOZ80_3BG0280820
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0378540.1
Poaceae	Lolium multiflorum	1	gene-QYE76_068080
Poaceae	Oryza coarctata	2	Oco05G012980, Oco06G013490
Poaceae	Oryza sativa	3	LOC_Os03g21830.1, LOC_Os06g34540.1, LOC_Os08g04480.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G362200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0102644, Pt_Chr0102649
Poaceae	Sporobolus alterniflorus	4	Chr03G007810, Chr07G001150, Chr10G008810, Chr12G009840
Poaceae	Thinopyrum elongatum	1	Tel4E01G308900
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG018600, gene_TRIDC4BG030740
Poaceae	Triticum aestivum	3	TraesCS4A02G135800.1, TraesCS4B02G169200.1 ... TraesCS4D02G171400.2
Poaceae	Zea mays	1	Zm00001eb016110_P002
Poaceae	Zoysia japonica	1	nbis-gene-1656
Poaceae	Zoysia macrostachya	1	Zma_g1252
Portulacaceae	Portulaca oleracea	2	evm.TU.LG10.61, evm.TU.LG17.55
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g12930
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_4_RagTag.884
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-27457, nbisL1-mrna-27458
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-1512
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.565
Rhizophoraceae	Kandelia obovata	1	Maker00001156
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-14339
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-19360
Salicaceae	Populus euphratica	1	populus_peu16374
Solanaceae	Lycium barbarum	1	gene-LOC132640442
Solanaceae	Solanum chilense	1	SOLCI005777100
Solanaceae	Solanum pennellii	1	gene-LOC107020959
Tamaricaceae	Reaumuria soongarica	1	gene_13781
Tamaricaceae	Tamarix chinensis	1	TC09G0563
Zosteraceae	Zostera marina	1	Zosma02g05260.v3.1