Basic Information
Locus ID:
BniB01g004580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 2245136 | 2247030 | - | BniB01g004580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 44,629.83 Da | 51.04 | 82.90 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 282 | 0.023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 286 | 5.33E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 308 | 1.3E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 242 | 283 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 28 | 65 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 239 | 0.02 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40810.1 | homolog of yeast autophagy 18C. | 0 |
| RefSeq | XP_018477186.1 | PREDICTED: autophagy-related protein 18c [Raphanus sativus] | 0 |
| Q8GYD7 | Autophagy-related protein 18c OS=Arabidopsis thaliana OX=3702 GN=ATG18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0MXK1 | autophagy-related protein 18c OS=Raphanus sativus OX=3726 GN=LOC108848347 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology