Basic Information
Locus ID:
BniB01g004480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 2215604 | 2220221 | + | BniB01g004480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 104,122.79 Da | 50.12 | 83.51 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 767 | 914 | 1.53783E-58 | - |
| Pfam | PF06337 | DUSP domain | 38 | 144 | 1.0E-24 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 316 | 913 | 4.3E-87 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 144 | 1.96E-27 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 314 | 915 | 2.94E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 302 | 553 | 8.5E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 636 | 922 | 1.3E-57 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 5 | 157 | 1.2E-36 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 158 | 247 | 6.2E-15 | - |
| SMART | SM00695 | dusp | 34 | 147 | 6.8E-45 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 316 | 916 | 56.125317 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 15 | 145 | 18.389675 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 317 | 332 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 858 | 875 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 685 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_013636182.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 [Brassica oleracea var. oleracea] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7RM14 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_050330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology