Basic Information
Locus ID:
BniB01g004160.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
rna polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 2086768 | 2087764 | - | BniB01g004160.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 26,156.60 Da | 28.46 | 94.87 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03871 | RNA polymerase Rpb5, N-terminal domain | 26 | 113 | 4.3E-18 | IPR005571 |
| Pfam | PF01191 | RNA polymerase Rpb5, C-terminal domain | 157 | 229 | 8.9E-28 | IPR000783 |
| SUPERFAMILY | SSF53036 | Eukaryotic RPB5 N-terminal domain | 25 | 158 | 4.45E-28 | IPR036710 |
| SUPERFAMILY | SSF55287 | RPB5-like RNA polymerase subunit | 155 | 230 | 1.7E-25 | IPR035913 |
| Gene3D | G3DSA:3.90.940.20 | - | 155 | 230 | 3.0E-25 | IPR035913 |
| Gene3D | G3DSA:3.40.1340.10 | - | 18 | 154 | 5.9E-31 | IPR036710 |
| PIRSF | PIRSF000747 | RPB5 | 17 | 230 | 4.4E-80 | IPR014381 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41340.1 | RNA polymerase II fifth largest subunit, D. NRPE5-like protein of unknown function; homologous to budding yeast RPB5 | 0 |
| RefSeq | XP_013631808.1 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 5B [Brassica oleracea var. oleracea] | 0 |
| Q9ZVB9 | DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702 GN=NRPD5B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9ID22 | RNA_pol_Rpb5_C domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q68_00028243 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4270 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24448 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022125, Ah032408 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g041340, BVRB_3g062710 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30740, Sbi_jg30889, Sbi_jg58387, Sbi_jg58521 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28267, Seu_jg28394 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004248, GOSA_00019812 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl63126, Sgl63258, Sgl66273, Sgl67740, Sgl70591 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015288, gene:ENSEOMG00000028789 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0004110, CQ.Regalona.r1.2BG0005880 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30166030, pistato.v30188820 |
| Apiaceae | Apium graveolens | 3 | Ag10G02296, Ag7G01060, Ag8G00803 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720724 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2840.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G12225, Ftri12G03514 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G41340.1, AT3G54490.1, AT3G57080.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006218m.g.v1.0, Thhalv10011060m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g23630.v2.2, Sp5g05500.v2.2, Sp5g07930.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g004160.2N, BniB06g065360.2N, BniB08g071810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0944 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1056, Cgl04G1070 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g17460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4104 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2594, evm.TU.LG02.1973 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003451, Pov_00017712, Pov_00039367 |
| Poaceae | Echinochloa crus-galli | 7 | AH04.246, AH05.163, AH09.6, BH04.240, BH05.188, CH04.259 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0380870, gene-QOZ80_5BG0427980 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0355980.1, HORVU.MOREX.r3.5HG0460760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003247, gene-QYE76_065304 |
| Poaceae | Oryza coarctata | 4 | Oco21G000810, Oco22G001650, Oco23G001570, Oco24G001000 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g04730.1, LOC_Os12g04510.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G040800, gene-BS78_K037300, gene-BS78_K047100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0103666, Pt_Chr0103684, Pt_Chr0703084, Pt_Chr0703095 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G021580, Chr16G009190 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G206300, Tel5E01G239600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029680, gene_TRIDC4BG020720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G185400.1, TraesCS4B02G133200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb093130_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-40149, nbis-gene-46380, nbis-gene-46381 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25485 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.406, evm.TU.LG13.1297, evm.TU.LG15.534 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g05450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_8_RagTag.1466, evm.TU.Scaffold_8_RagTag.166 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-10169, nbisL1-mrna-8485, nbisL1-mrna-8489 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17876, nbisL1-mrna-20262 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17791 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.144, evm.TU.utg000018l.891 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003216, Maker00003334 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3114, nbisL1-mrna-9485 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11436, nbisL1-mrna-18837 |
| Salicaceae | Populus euphratica | 2 | populus_peu04269, populus_peu26250 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623274 |
| Solanaceae | Solanum chilense | 1 | SOLCI000553000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007738, gene-LOC107016042 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21199_chr08_+, gene_13505 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1925 |
| Zosteraceae | Zostera marina | 1 | Zosma04g24970.v3.1 |