Basic Information
Locus ID:
BniB01g003720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 1870864 | 1871950 | + | BniB01g003720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 35,330.01 Da | 40.35 | 68.34 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 174 | 302 | 9.30715E-61 | - |
| CDD | cd16571 | RING-HC_SIAHs | 58 | 96 | 7.80267E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 102 | 301 | 1.8E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 113 | 305 | 8.5E-47 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 46 | 102 | 2.36E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 167 | 3.3E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 112 | 2.1E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 168 | 301 | 3.5E-38 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 113 | 173 | 13.69062 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 96 | 9.376395 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41980.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_024003796.1 | putative E3 ubiquitin-protein ligase SINAT1 [Eutrema salsugineum] | 0 |
| P93748 | Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana OX=3702 GN=SINAT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8ARD4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029221 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology