Basic Information
Locus ID:
BniB01g002480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 1247838 | 1251222 | + | BniB01g002480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 35,089.93 Da | 38.17 | 95.94 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 29 | 255 | 4.21515E-66 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 27 | 255 | 6.7E-56 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 11 | 259 | 7.46E-61 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 16 | 261 | 1.7E-51 | - |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | 5.0 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43700.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_013635247.1 | PREDICTED: probable L-type lectin-domain containing receptor kinase V.3 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| O22833 | L-type lectin-domain containing receptor kinase V.4 OS=Arabidopsis thaliana OX=3702 GN=LECRK54 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VEC4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43690.1, AT2G43700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001352m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB01g002460.2N, BniB01g002480.2N, BniB08g028550.2N |