Basic Information
Locus ID:
BniB01g002460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 1238949 | 1240934 | - | BniB01g002460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 74,210.01 Da | 35.73 | 90.55 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 341 | 610 | 1.68339E-85 | - |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 29 | 248 | 1.88226E-72 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 338 | 544 | 1.6E-46 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 28 | 249 | 3.7E-57 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 10 | 252 | 5.13E-63 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 318 | 617 | 1.89E-76 | IPR011009 |
| Gene3D | G3DSA:2.60.120.200 | - | 18 | 252 | 2.2E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 322 | 411 | 1.1E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 412 | 621 | 3.5E-58 | - |
| SMART | SM00220 | serkin_6 | 335 | 597 | 4.7E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 335 | 619 | 36.951237 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 341 | 364 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 459 | 471 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43690.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_013635247.1 | PREDICTED: probable L-type lectin-domain containing receptor kinase V.3 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| O22834 | Probable L-type lectin-domain containing receptor kinase V.3 OS=Arabidopsis thaliana OX=3702 GN=LECRK53 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D3C642 | Protein kinase domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106340973 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43690.1, AT2G43700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001352m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB01g002460.2N, BniB01g002480.2N, BniB08g028550.2N |