halophFGD

Basic Information

Locus ID: BniB01g001790.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: armadillo beta-catenin repeat family protein F-box family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B1	929003	932173	+	BniB01g001790.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.07	96,871.61 Da	40.13	97.16	0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00514	Armadillo/beta-catenin-like repeat	608	651	2.5E-4	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	655	692	1.8E-9	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	400	434	8.2E-5	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	694	733	2.0E-4	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	478	520	6.9E-8	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	441	475	2.5E-4	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	522	562	2.4E-7	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	569	606	6.0E-10	IPR000225
SUPERFAMILY	SSF52047	RNI-like	39	270	3.53E-21	-
SUPERFAMILY	SSF48371	ARM repeat	338	723	1.42E-48	IPR016024
Gene3D	G3DSA:1.25.10.10	-	502	566	1.2E-12	IPR011989
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	10	283	1.9E-33	IPR032675
Gene3D	G3DSA:1.25.10.10	-	340	501	5.4E-21	IPR011989
Gene3D	G3DSA:1.25.10.10	-	659	878	9.7E-17	IPR011989
Gene3D	G3DSA:1.25.10.10	-	567	658	5.1E-22	IPR011989
SMART	SM00185	arm_5	694	735	0.72	IPR000225
SMART	SM00185	arm_5	653	693	5.5E-5	IPR000225
SMART	SM00185	arm_5	395	435	17.0	IPR000225
SMART	SM00185	arm_5	608	652	0.64	IPR000225
SMART	SM00185	arm_5	521	562	0.0035	IPR000225
SMART	SM00185	arm_5	567	607	5.3E-7	IPR000225
SMART	SM00367	LRR_CC_2	155	180	0.0034	IPR006553
SMART	SM00185	arm_5	477	520	3.4E-5	IPR000225
SMART	SM00185	arm_5	436	476	1.3	IPR000225
SMART	SM00367	LRR_CC_2	181	206	110.0	IPR006553
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	406	448	9.2224	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	488	533	12.1974	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	664	706	14.2624	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	578	620	16.3974	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	619	665	10.9374	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	447	489	10.6574	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	532	563	8.8724	IPR000225

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G44900.1	ARABIDILLO-1. ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.
RefSeq	XP_009142304.1	protein ARABIDILLO 1 [Brassica rapa]
Swiss-Prot	O22161	Protein ARABIDILLO 1 OS=Arabidopsis thaliana OX=3702 GN=FBX5 PE=1 SV=1
TrEMBL	A0A8X8APS0	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029403 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg1772, jg26783, jg26784, jg29182, jg29716, jg29721
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1300
Amaranthaceae	Atriplex hortensis	1	Ah023302
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg29178, Sbi_jg3400
Amaranthaceae	Salicornia europaea	1	Seu_jg6549
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00000173
Amaranthaceae	Suaeda glauca	2	Sgl11401, Sgl16777
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014688, gene:ENSEOMG00000035750 ... gene:ENSEOMG00000047450
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0007280, CQ.Regalona.r1.2BG0010720 ... CQ.Regalona.r1.2BG0022260
Anacardiaceae	Pistacia vera	2	pistato.v30001820, pistato.v30187980
Apiaceae	Apium graveolens	3	Ag1G00135, Ag5G01184, Ag5G01185
Arecaceae	Cocos nucifera	2	COCNU_07G005060, COCNU_10G003570
Arecaceae	Phoenix dactylifera	2	gene-LOC103704656, gene-LOC103713583
Asparagaceae	Asparagus officinalis	1	AsparagusV1_10.810.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G24367, Ftri7G10964
Brassicaceae	Arabidopsis thaliana	2	AT2G44900.1, AT3G60350.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001300m.g.v1.0, Thhalv10005776m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g26970.v2.2, Sp5g02870.v2.2, Sp5g02880.v2.2 ... SpUN0080_0050.v2.2
Brassicaceae	Brassica nigra	8	BniB01g001790.2N, BniB05g044350.2N, BniB06g062610.2N ... BniB08g029270.2N, BniB08g074620.2N, BniB08g074660.2N, BniB08g074670.2N, BniB08g074710.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1069
Casuarinaceae	Casuarina glauca	1	Cgl05G1085
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g02140, gene.Cymno11g09100
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g01670
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2676
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.77
Plantaginaceae	Plantago ovata	2	Pov_00017049, Pov_00017050
Plumbaginaceae	Limonium bicolor	2	Lb0G37100, Lb5G28093
Poaceae	Echinochloa crus-galli	3	AH01.2896, BH01.3234, CH01.3466
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0116820, gene-QOZ80_2BG0170540
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0057680.1, HORVU.MOREX.r3.4HG0416450.1
Poaceae	Lolium multiflorum	4	gene-QYE76_012700, gene-QYE76_071567, gene-QYE76_071568 ... gene-QYE76_071886
Poaceae	Oryza coarctata	2	Oco19G010330, Oco20G010150
Poaceae	Oryza sativa	1	LOC_Os10g41360.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G285000
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0101058, Pt_Chr0101167, Pt_Chr0503221, Pt_Chr0503266 ... Pt_Chr0503300, Pt_Chr0506189
Poaceae	Sporobolus alterniflorus	2	Chr09G005060, Chr13G019750
Poaceae	Thinopyrum elongatum	2	Tel1E01G369100, Tel4E01G609100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG032880, gene_TRIDC1BG038290 ... gene_TRIDC4BG061780, gene_TRIDC5AG076810
Poaceae	Triticum aestivum	6	TraesCS1A02G217900.1, TraesCS1B02G231300.1 ... TraesCS1D02G219600.1, TraesCS4B02G371400.1, TraesCS4D02G366000.1, TraesCS5A02G542900.1
Poaceae	Zea mays	4	Zm00001eb023660_P001, Zm00001eb269460_P001 ... Zm00001eb390940_P001, Zm00001eb390950_P001
Poaceae	Zoysia japonica	4	nbis-gene-36370, nbis-gene-38014, nbis-gene-38015 ... nbis-gene-57975
Poaceae	Zoysia macrostachya	2	Zma_g12920, Zma_g15691
Portulacaceae	Portulaca oleracea	1	evm.TU.LG04.1003
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g01850
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1237, evm.TU.Scaffold_4_RagTag.253 ... evm.TU.Scaffold_8_RagTag.1495
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12427, nbisL1-mrna-12539, nbisL1-mrna-29097 ... nbisL1-mrna-8349, nbisL1-mrna-8428
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10521, nbisL1-mrna-18627, nbisL1-mrna-6877
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12807, nbisL1-mrna-15182, nbisL1-mrna-2042
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.161, evm.TU.utg000010l.278 ... evm.TU.utg000018l.127
Rhizophoraceae	Kandelia obovata	2	Maker00001180, Maker00003741
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-2438, nbisL1-mrna-9469
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18860, nbisL1-mrna-22778, nbisL1-mrna-6164
Salicaceae	Populus euphratica	2	populus_peu03806, populus_peu31886
Solanaceae	Lycium barbarum	1	gene-LOC132645782
Solanaceae	Solanum chilense	1	SOLCI002632500
Solanaceae	Solanum pennellii	1	gene-LOC107005143
Tamaricaceae	Reaumuria soongarica	1	gene_3240
Tamaricaceae	Tamarix chinensis	2	TC02G0052, TC10G2244
Zosteraceae	Zostera marina	2	Zosma03g36140.v3.1, Zosma03g36200.v3.1