Basic Information
Locus ID:
BniB01g001530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 806079 | 808847 | - | BniB01g001530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 75,551.32 Da | 38.47 | 93.84 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 424 | 688 | 2.80796E-101 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 214 | 235 | 0.67 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 141 | 200 | 3.2E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 6.7E-9 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 422 | 685 | 1.1E-38 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 23 | 236 | 8.16E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 392 | 686 | 1.11E-56 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 137 | 2.9E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 387 | 496 | 5.7E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 497 | 692 | 2.7E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 138 | 260 | 2.0E-29 | IPR032675 |
| SMART | SM00220 | serkin_6 | 418 | 661 | 4.4E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 418 | 692 | 28.371897 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45340.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013688125.2 | LRR receptor-like serine/threonine-protein kinase RGI5 [Brassica napus] | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A817B4L4 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A04P33760.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology