Basic Information
Locus ID:
BniB01g001190.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 627024 | 630384 | - | BniB01g001190.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 91,653.54 Da | 49.37 | 81.18 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 46 | 199 | 5.04405E-48 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 757 | 798 | 1.80747E-25 | - |
| Pfam | PF04564 | U-box domain | 753 | 823 | 1.9E-19 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 479 | 721 | 2.8E-40 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 58 | 163 | 4.1E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 753 | 823 | 3.27E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 451 | 729 | 2.16E-63 | IPR011009 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 39 | 164 | 1.3E-9 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 548 | 744 | 5.6E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 460 | 547 | 6.6E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 750 | 824 | 2.6E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 756 | 819 | 1.1E-31 | IPR003613 |
| SMART | SM00220 | serkin_6 | 475 | 733 | 2.2E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 475 | 734 | 32.979584 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 752 | 824 | 40.285084 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 593 | 605 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 481 | 502 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 293 | - | - |
| Coils | Coil | Coil | 404 | 452 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_013749678.1 | U-box domain-containing protein 33 [Brassica napus] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7R8Z0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_044537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology