Basic Information
Locus ID:
BniB01g000980.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 494904 | 496557 | + | BniB01g000980.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 40,815.02 Da | 58.48 | 83.73 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 316 | 358 | 4.1072E-16 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 28 | 92 | 6.1E-9 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 316 | 358 | 1.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 310 | 360 | 1.32E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 362 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 316 | 357 | 3.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 316 | 358 | 12.149959 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46494.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013635739.1 | PREDICTED: putative RING-H2 finger protein ATL21B [Brassica oleracea var. oleracea] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7VE28 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029488 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology