Basic Information
Locus ID:
BniB01g000970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 492893 | 494360 | + | BniB01g000970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 41,553.45 Da | 59.82 | 88.84 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 319 | 362 | 2.53177E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 93 | 4.6E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 320 | 362 | 5.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 312 | 365 | 2.63E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 367 | 9.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 320 | 361 | 1.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 320 | 362 | 12.179465 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018481698.1 | PREDICTED: putative RING-H2 finger protein ATL21A [Raphanus sativus] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A6J0NCV4 | putative RING-H2 finger protein ATL21A OS=Raphanus sativus OX=3726 GN=LOC108852699 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology