Basic Information
Locus ID:
BniB01g000960.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 490388 | 491784 | + | BniB01g000960.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 36,231.34 Da | 59.79 | 87.38 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 275 | 318 | 6.4099E-15 | - |
| Pfam | PF13639 | Ring finger domain | 276 | 318 | 3.2E-11 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 16 | 83 | 3.9E-18 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 271 | 320 | 9.32E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 323 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 276 | 317 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 276 | 318 | 12.164712 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013634834.1 | PREDICTED: putative RING-H2 finger protein ATL21A [Brassica oleracea var. oleracea] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A397ZRW6 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA04T18899Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology