Basic Information
Locus ID:
BniB01g000430.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 171379 | 172574 | - | BniB01g000430.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 25,022.87 Da | 49.86 | 55.55 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 80 | 165 | 6.2E-16 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 80 | 168 | 8.8E-20 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 63 | - | - |
| Coils | Coil | Coil | 69 | 99 | - | - |
| Coils | Coil | Coil | 125 | 145 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_002880296.1 | myosin-3 [Arabidopsis lyrata subsp. lyrata] | 0 |
| TrEMBL | A0A8X7VED9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_029451 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology