Basic Information
Locus ID:
BVRB_9g223100
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 43941494 | 43951558 | - | BVRB_9g223100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 65,166.09 Da | 42.48 | 79.37 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 450 | 492 | 0.00979299 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 447 | 487 | 7.52E-7 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 35 | 243 | 1.82E-7 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 442 | 496 | 1.9E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 437 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15940.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_010691596.1 | sister chromatid cohesion protein PDS5 homolog E isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9S9P0 | Sister chromatid cohesion protein PDS5 homolog E OS=Arabidopsis thaliana OX=3702 GN=PDS5E PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUR0 | Tudor domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology