Basic Information
Locus ID:
BVRB_9g220080
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 40652357 | 40659218 | + | BVRB_9g220080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 145,686.31 Da | 35.03 | 106.45 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 129 | 416 | 5.70405E-102 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 746 | 1040 | 3.57052E-92 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 442 | 642 | 1.19398E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1063 | 1283 | 9.89222E-119 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 128 | 395 | 1.0E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 748 | 989 | 2.4E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1083 | 1230 | 1.4E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 460 | 594 | 1.1E-20 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1057 | 1292 | 8.23E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 117 | 426 | 1.03E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 438 | 664 | 1.11E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 746 | 1047 | 1.01E-53 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 100 | 424 | 3.0E-48 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 710 | 1046 | 4.1E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 426 | 678 | 8.8E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1048 | 1301 | 3.9E-80 | IPR027417 |
| SMART | SM00382 | AAA_5 | 469 | 642 | 2.8E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1091 | 1283 | 2.5E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 128 | 408 | 31.924507 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 748 | 1028 | 36.961315 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1065 | 1299 | 18.554216 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 444 | 665 | 22.035591 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 567 | 581 | - | IPR017871 |
| Coils | Coil | Coil | 289 | 309 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010691202.2 | - | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology