Basic Information
Locus ID:
BVRB_9g219470
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 39976607 | 39988856 | + | BVRB_9g219470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 138,627.06 Da | 47.55 | 77.64 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 669 | 801 | 4.40846E-70 | - |
| CDD | cd17920 | DEXHc_RecQ | 469 | 668 | 3.7072E-104 | - |
| Pfam | PF09382 | RQC domain | 892 | 1007 | 1.7E-22 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 803 | 884 | 4.3E-16 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 687 | 791 | 6.9E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 480 | 648 | 2.5E-20 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1052 | 1119 | 3.0E-13 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 448 | 810 | 4.88E-42 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 893 | 1019 | 9.79E-17 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1051 | 1124 | 5.01E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 667 | 935 | 1.13E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 669 | 886 | 4.4E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1043 | 1132 | 7.2E-20 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 887 | 1011 | 6.5E-19 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 442 | 668 | 3.4E-93 | IPR027417 |
| SMART | SM00487 | ultradead3 | 474 | 677 | 9.6E-32 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1047 | 1129 | 9.3E-4 | IPR002121 |
| SMART | SM00956 | RQC_2 | 894 | 1005 | 5.9E-29 | IPR018982 |
| SMART | SM00490 | helicmild6 | 711 | 792 | 5.1E-28 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 470 | 945 | 8.4E-165 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 486 | 661 | 21.675505 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 686 | 832 | 18.983868 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1047 | 1129 | 16.665668 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 701 | 743 | 9.22127 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 600 | 609 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1023 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1213 | 1238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1177 | - | - |
| Coils | Coil | Coil | 307 | 327 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_010691128.1 | ATP-dependent DNA helicase Q-like 4A [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology