Basic Information
Locus ID:
BVRB_9g215970
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 36352098 | 36353239 | - | BVRB_9g215970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 29,255.80 Da | 51.24 | 74.25 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 197 | 243 | 5.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 249 | 1.03E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 248 | 7.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 197 | 243 | 0.0019 | IPR011016 |
| SMART | SM00184 | ring_2 | 198 | 242 | 8.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 198 | 243 | 12.267982 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12210.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010690738.1 | - | 0 |
| TrEMBL | A0A0K9RED9 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_075940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14054 |
| Amaranthaceae | Atriplex hortensis | 8 | Ah002233, Ah009874, Ah009885, Ah014959, Ah014962, Ah014966 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g215960, BVRB_9g215970 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017607 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33425, Sgl38793 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011465, gene:ENSEOMG00000030076 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0016950, CQ.Regalona.r1.8BG0017900 |