Basic Information
Locus ID:
BVRB_9g215960
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 36332454 | 36333639 | - | BVRB_9g215960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 27,836.76 Da | 45.34 | 78.62 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 185 | 233 | 6.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 237 | 1.33E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 238 | 5.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 232 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 233 | 13.13841 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048493146.1 | uncharacterized protein LOC125493699 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LGV8 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14054 |
| Amaranthaceae | Atriplex hortensis | 8 | Ah002233, Ah009874, Ah009885, Ah014959, Ah014962, Ah014966 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g215960, BVRB_9g215970 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017607 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33425, Sgl38793 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011465, gene:ENSEOMG00000030076 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0016950, CQ.Regalona.r1.8BG0017900 |