Basic Information
Locus ID:
BVRB_9g214150
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 33834758 | 33848706 | - | BVRB_9g214150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 201,867.52 Da | 45.68 | 83.98 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1456 | 1877 | 4.62015E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1503 | 1882 | 1.3E-80 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 172 | 641 | 5.76E-39 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1449 | 1875 | 5.49E-94 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1398 | 1645 | 2.2E-44 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 161 | 483 | 8.0E-52 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1755 | 1880 | 2.7E-32 | - |
| SMART | SM00185 | arm_5 | 204 | 245 | 94.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 287 | 327 | 73.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 330 | 368 | 8.3 | IPR000225 |
| SMART | SM00119 | hect_3 | 1467 | 1882 | 6.5E-79 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1480 | 1882 | 53.82423 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1267 | 1294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1124 | 1161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 1006 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1038 | 1062 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1063 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1161 | - | - |
| Coils | Coil | Coil | 82 | 102 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology