Basic Information
Locus ID:
BVRB_9g214050
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 33640061 | 33643308 | + | BVRB_9g214050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 44,321.00 Da | 48.54 | 79.06 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 184 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 321 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 197 | 233 | 0.0012 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 16 | 86 | 1.6E-22 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 342 | 377 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 277 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 379 | 8.37E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 392 | 1.2E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 233 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 184 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 321 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 277 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 378 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 136 | 190.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 186 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 379 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 236 | 8.992876 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 242 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 323 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 323 | 11.207411 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 171 | 185 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 308 | 322 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 308 | 322 | 1.9E-5 | IPR020472 |
| Coils | Coil | Coil | 392 | 393 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_010690365.1 | WD-40 repeat-containing protein MSI2 [Beta vulgaris subsp. vulgaris] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RAK2 | CAF1C_H4-bd domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology