Basic Information
Locus ID:
BVRB_9g206770
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
5' exonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 10286066 | 10290991 | + | BVRB_9g206770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 49,291.12 Da | 44.09 | 85.69 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07522 | DNA repair metallo-beta-lactamase | 252 | 336 | 8.8E-9 | IPR011084 |
| SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 16 | 333 | 1.76E-27 | IPR036866 |
| Gene3D | G3DSA:3.60.15.10 | - | 4 | 339 | 1.6E-78 | IPR036866 |
| Gene3D | G3DSA:3.40.50.12650 | - | 157 | 318 | 1.6E-78 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27410.1 | DNA repair metallo-beta-lactamase family protein. | 0 |
| RefSeq | XP_010689316.2 | 5' exonuclease Apollo [Beta vulgaris subsp. vulgaris] | 0 |
| Q5QJC3 | 5' exonuclease Apollo OS=Gallus gallus OX=9031 GN=DCLRE1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M8C7 | DRMBL domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24182 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20999 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037415 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24659, Sbi_jg8517 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20076 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42804, Sgl47554 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015241, gene:ENSEOMG00000039215 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0006680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019070 |
| Apiaceae | Apium graveolens | 1 | Ag11G03340 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712980 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.220.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G33554 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G27410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001995m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g33700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g070160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2505 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2597 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g05910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2152 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1974 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004456 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3499, BH02.3454, CH02.2997 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0035920, gene-QOZ80_1BG0085930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0293880.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G022010, Oco02G022550 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G298800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601639, Pt_Chr0601653 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G007860, Chr05G025660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G514300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046320, gene_TRIDC3BG052710 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G315700.1, TraesCS3B02G351200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb151390_P001, Zm00001eb369790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31269 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1445 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11945 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13314, nbisL1-mrna-2386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11035 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.833 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012966 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10362 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15407 |
| Salicaceae | Populus euphratica | 3 | populus_peu16734, populus_peu16735, populus_peu16946 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617737, gene-LOC132619496 |
| Solanaceae | Solanum chilense | 1 | SOLCI003459100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024681 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7435 |