Basic Information
Locus ID:
BVRB_9g204180
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2962352 | 2964176 | - | BVRB_9g204180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 45,720.71 Da | 38.38 | 83.19 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 46 | 80 | 0.0027 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 44 | 120 | 3.92E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 142 | 304 | 8.89E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 45 | 82 | 2.0E-5 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 145 | 330 | 5.2E-27 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010688903.2 | F-box/kelch-repeat protein At3g23880 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LPW2 | Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana OX=3702 GN=At1g12870 PE=4 SV=2 | 0 | |
| TrEMBL | A0A803L9K0 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g204180, BVRB_9g219200 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20871, Seu_jg423, Seu_jg7781 |
| Amaranthaceae | Suaeda aralocaspica | 11 | GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ... |
| Amaranthaceae | Suaeda glauca | 22 | Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ... |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ... |
| Amaranthaceae | Chenopodium quinoa | 15 | CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057782 |