Basic Information
Locus ID:
BVRB_9g202380
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 253713 | 276923 | + | BVRB_9g202380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 118,642.64 Da | 46.41 | 75.04 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 909 | 1017 | 3.06791E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 291 | 657 | 7.52636E-82 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 309 | 734 | 5.7E-66 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 773 | 809 | 6.6E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 911 | 1008 | 4.5E-15 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 771 | 823 | 2.36E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 277 | 657 | 4.78E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 665 | 1064 | 2.85E-55 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 757 | 823 | 4.9E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 672 | 1064 | 1.6E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 265 | 352 | 2.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 524 | 671 | 2.7E-32 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 419 | 508 | 1.0E-10 | IPR038718 |
| SMART | SM00487 | ultradead3 | 287 | 624 | 3.3E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 925 | 1008 | 8.5E-16 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 881 | 1061 | 14.298253 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 773 | 812 | 11.500827 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 439 | 619 | 11.678539 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 788 | 797 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 905 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 905 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 383 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_019107268.1 | helicase-like transcription factor CHR28 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology