Basic Information
Locus ID:
BVRB_8g193940
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 32926392 | 32937466 | + | BVRB_8g193940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 125,111.32 Da | 42.11 | 78.31 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 922 | 956 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 499 | 537 | 0.089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 494 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 355 | 674 | 5.31E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 841 | 1102 | 2.56E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 518 | 697 | 1.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 779 | 1109 | 2.8E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 318 | 517 | 7.2E-27 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 9.8E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 874 | 914 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 671 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 543 | 584 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 538 | 0.0064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 627 | 6.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1008 | 1049 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 835 | 871 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 917 | 956 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 494 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 447 | 1.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 460 | 503 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 924 | 958 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 924 | 965 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.608736 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.406576 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1135 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology