Basic Information
Locus ID:
BVRB_8g192990
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
NEDD8 ultimate buster
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 31510255 | 31515630 | + | BVRB_8g192990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 62,335.92 Da | 47.33 | 87.22 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14270 | UBA | 364 | 393 | 2.31143E-4 | - |
| Pfam | PF00627 | UBA/TS-N domain | 289 | 323 | 4.0E-6 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 350 | 398 | 5.36E-8 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 421 | 462 | 6.45E-5 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 266 | 326 | 2.55E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 14 | 74 | 8.75E-8 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 266 | 343 | 3.9E-10 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 362 | 398 | 1.1E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 6 | 78 | 3.1E-7 | - |
| SMART | SM00165 | uba_6 | 420 | 456 | 0.86 | IPR015940 |
| SMART | SM00165 | uba_6 | 288 | 325 | 8.3E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 360 | 397 | 0.14 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 73 | 10.50584 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 358 | 398 | 11.00468 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 286 | 326 | 12.956545 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 414 | 458 | 10.064893 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 495 | - | - |
| Coils | Coil | Coil | 324 | 348 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G12550.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein. | 0 |
| RefSeq | XP_048490718.1 | NEDD8 ultimate buster 1 [Beta vulgaris subsp. vulgaris] | 0 |
| P54729 | NEDD8 ultimate buster 1 OS=Mus musculus OX=10090 GN=Nub1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LX05 | NEDD8 ultimate buster 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15551 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10580 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014226, Ah014425 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25505, Sbi_jg9340 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19264 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011069 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41887, Sgl46689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008964, gene:ENSEOMG00000030455 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7BG0021410, CQ.Regalona.r1.8AG0023030 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30261870, pistato.v30262260 |
| Apiaceae | Apium graveolens | 4 | Ag1G00651, Ag2G01806, Ag3G02731, AgUnG01142 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G017540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715908 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.332.V1.1, AsparagusV1_03.56.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G10033 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G12550.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001944m.g.v1.0, Thhalv10022623m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g26680.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g011240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1427 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1489 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g16910 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0005s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04480 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.622 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001069 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32017 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2484, BH09.2704, CH09.2902 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301910, gene-QOZ80_4BG0332650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0205540.1 |
| Poaceae | Oryza coarctata | 1 | Oco08G016750 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55150.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G256200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300790, Pt_Chr0300807 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G002620, Chr25G002090, Chr26G016720, Chr30G002060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G881500, Tel4E01G045200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG072760, gene_TRIDC2BG078960 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G518400.1, TraesCS2B02G546800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb068670_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22995, nbis-gene-22996 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20545 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g04480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2256 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6633 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4999 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1319 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000556 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1862 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22284 |
| Salicaceae | Populus euphratica | 3 | populus_peu05677, populus_peu11041, populus_peu11064 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603092 |
| Solanaceae | Solanum chilense | 1 | SOLCI004481300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024036 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9013 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1167 |