Basic Information
Locus ID:
BVRB_8g191390
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29189171 | 29194553 | + | BVRB_8g191390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 49,058.92 Da | 40.41 | 75.50 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 304 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 343 | 0.088 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 183 | 2.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 146 | 435 | 2.01E-49 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 28 | 138 | 1.2E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 247 | 443 | 1.7E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 139 | 246 | 1.1E-15 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 5.0E-5 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 113 | 139 | 0.093 | IPR000571 |
| SMART | SM00320 | WD40_4 | 348 | 391 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 431 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 344 | 0.0096 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 260 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 304 | 4.4E-4 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 12.849548 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 113 | 140 | 11.966972 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 274 | 307 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 192 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 313 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 183 | 12.024679 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 291 | 305 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 291 | 305 | 7.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 331 | 345 | 7.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 170 | 184 | 7.8E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_048491351.1 | - | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MB75 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology